Program Requirements
Required Courses (6 credits)
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QLSC 600D1 Foundations of Quantitative Life Sciences (3 credits)
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : Provides an overview of important problems in the life sciences and introduces students to the latest computational, mathematical, and statistical approaches involved in their solution. Includes a survey of modern technologies for biological data acquisition and promotes a common language to communicate across the biological, physical, mathematical, and computational sciences. Topics will include bioinformatics and computational genomics, nonlinear dynamics in biological systems, linear and nonlinear models of biological signals, biophysical imaging technology, emergent behaviour in biophysical networks, and ecosystem dynamics and modeling.
Terms: Fall 2022
Instructors: Cook, Erik; Greenwood, Celia; Glass, Leon; Sladek, Robert; Langlais, David; Krishna, Suresh; Bashivan, Pouya (Fall)
Prerequisite(s): BIOL 200 or BIOL 201; COMP 206, COMP 250, MATH 314; MATH 223 or MATH 236; MATH 323 or MATH 324
Restriction(s): Priority given to students enrolled in the ad hoc Quantitative Life Sciences Ph.D. program.
No credit will be given for this course unless both QLSC 600D1 and QLSC 600D2 are successfully completed in consecutive terms.
Students must register for both QLSC 600D1 and QLSC 600D2
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QLSC 600D2 Foundations of Quantitative Life Sciences (3 credits)
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : Provides an overview of important problems in the life sciences and introduces students to the latest computational, mathematical, and statistical approaches involved in their solution. Includes a survey of modern technologies for biological data acquisition and promotes a common language to communicate across the biological, physical, mathematical, and computational sciences. Topics will include bioinformatics and computational genomics, nonlinear dynamics in biological systems, linear and nonlinear models of biological signals, biophysical imaging technology, emergent behaviour in biophysical networks, and ecosystem dynamics and modeling.
Terms: Winter 2023
Instructors: Cook, Erik; Nadon, Robert; Grant, Audrey; Diatchenko, Luda; Oyama, Tomoko; Poline, Jean-Baptiste (Winter)
Prerequisite(s): BIOL 200 or BIOL 201; COMP 206, COMP 250, MATH 314; MATH 223 or MATH 236; MATH 323 or MATH 324
Restriction(s): Priority given to students enrolled in the ad hoc Quantitative Life Sciences Ph.D. program.
Prerequisite: QLSC 600D1
No credit will be given for this course unless both QLSC 600D1 and QLSC 600D2 are successfully completed in consecutive terms.
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QLSC 601D1 Quantitative Life Sciences Seminars 1
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : QLS Monthly Seminar Series and Journal Club.
Terms: Fall 2022
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Students must register for both QLSC 601D1 and QLSC 601D2
No credit will be given for this course unless both QLSC 601D1 and QLSC 601D2 are successfully completed in consecutive terms
Restriction: Restricted to students enrolled in QLS.
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QLSC 601D2 Quantitative Life Sciences Seminars 1
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : See QLSC 601D1 for description.
Terms: Winter 2023
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Prerequisite: QLSC 601D1
No credit will be given for this course unless both QLSC 601D1 and QLSC 601D2 are successfully completed in consecutive terms.
Restriction: Restricted to students enrolled in QLS.
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QLSC 602D1 Quantitative Life Sciences Seminars 2
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : QLS Monthly Seminar Series and Journal Club.
Terms: Fall 2022
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Students must register for both QLSC 602D1 and QLSC 602D2
No credit will be given for this course unless both QLSC 602D1 and QLSC 602D2 are successfully completed in consecutive terms
Restriction: Restricted to students enrolled in QLS.
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QLSC 602D2 Quantitative Life Sciences Seminars 2
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : See QLSC 602D1 for description.
Terms: Winter 2023
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Prerequisite: QLSC 602D1
No credit will be given for this course unless both QLSC 602D1 and QLSC 602D2 are successfully completed in consecutive terms
Restriction: Restricted to students enrolled in QLS.
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QLSC 603D1 Quantitative Life Sciences Seminars 3
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : QLS Monthly Seminar Series and Journal Club.
Terms: Fall 2022
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Students must register for both QLSC 603D1 and QLSC 603D2
No credit will be given for this course unless both QLSC 603D1 and QLSC 603D2 are successfully completed in consecutive terms.
Restriction: Restricted to students enrolled in QLS.
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QLSC 603D2 Quantitative Life Sciences Seminars 3
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : See QLSC 603D1 for description.
Terms: Winter 2023
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Prerequisite: QLSC 603D1
No credit will be given for this course unless both QLSC 603D1 and QLSC 603D2 are successfully completed in consecutive terms
Restriction: Restricted to students enrolled in QLS.
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QLSC 701 Ph.D. Comprehensive Exam
Offered by: Quantitative Life Sciences (Interfaculty Studies)
Administered by: Graduate Studies
Overview
QLSC : Compulsory comprehensive examination to evaluate the students' ability to carry out, present, discuss and defend research in their field of interest. The examination must be completed within the first 18 months of enrollment in the program.
Terms: Fall 2022, Winter 2023
Instructors: Greenwood, Celia (Fall) Greenwood, Celia (Winter)
Complementary Courses
9-11 credits
Students will be required to take one or two courses from each of the Quantitative and Life Science Blocks for a total of three, stream-specific courses.
Biophysics Stream
Quantitative
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BIEN 530 Imaging and Bioanalytical Instrumentation (3 credits)
Offered by: Bioengineering (Faculty of Engineering)
Overview
BIEN : Microscopy techniques with application to biology and medicine. Practical introduction to optics and microscopy from the standpoint of biomedical research. Discussion of recent literature; hands-on experience. Topics include: optics, contrast techniques, advanced microscopy, and image analysis.
Terms: Winter 2023
Instructors: Hendricks, Adam (Winter)
Prerequisite: Permission of instructor.
(3-1-5)
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BMDE 512 Finite-Element Modelling in Biomedical Engineering (3 credits)
Offered by: Biomedical Engineering (Faculty of Engineering)
Overview
Biomedical Engineering : General principles of quantitative modelling; types of models; principles of the finite-element method, primarily as applied to mechanical systems; introduction to the use of finite-element software; model generation from imaging data; modelling various material types, mainly biological; model validation.
Terms: Fall 2022
Instructors: Funnell, Robert (Fall)
(3-0-6)
Prerequisite: Differential equations (MATH 271 or equivalent) or permission of instructor
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BMDE 519 Biomedical Signals and Systems (3 credits)
Offered by: Biomedical Engineering (Faculty of Engineering)
Overview
Biomedical Engineering : An introduction to the theoretical framework, experimental techniques and analysis procedures available for the quantitative analysis of physiological systems and signals. Lectures plus laboratory work using the Biomedical Engineering computer system. Topics include: amplitude and frequency structure of signals, filtering, sampling, correlation functions, time and frequency-domain descriptions of systems.
Terms: Fall 2022
Instructors: Kearney, Robert E (Fall)
(3-0-6)
Prerequisites: Satisfactory standing in U3 Honours Physiology; or U3 Major in Physics-Physiology; or U3 Major Physiology-Mathematics; or permission of instructor
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CHEM 514 Biophysical Chemistry (3 credits)
Offered by: Chemistry (Faculty of Science)
Overview
Chemistry : Physical chemistry concepts needed to understand the function of biological systems at the molecular level, including the structure, stability, transport, and interactions of biological macromolecules.
Terms: This course is not scheduled for the 2022-2023 academic year.
Instructors: There are no professors associated with this course for the 2022-2023 academic year.
Winter
Prerequisite: CHEM 203 or CHEM 204 or CHEM 223 and CHEM 243, or permission of instructor.
Restriction: Not open to students who have taken CHEM 404.
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CHEM 520 Methods in Chemical Biology (3 credits)
Offered by: Chemistry (Faculty of Science)
Overview
Chemistry : An overview of advanced techniques at the leading edge of Chemical Biology, including some or all of: biological imaging, kinetics of enzyme inhibition, combinatorial synthesis, atomic force microscopy of biological molecules, self assembling biomimetic structures, oligonucleotide therapeutics, biomolecular X-ray crystallography, computational methods, and nuclear magnetic resonance applied to protein interactions.
Terms: Fall 2022
Instructors: Kostikov, Alexey; Mauzeroll, Janine; Mittermaier, Anthony; Thibodeaux, Christopher (Fall)
Fall
Prerequisites: BIOL 200 and CHEM 345 and CHEM 302, or permission of instructor
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COMP 551 Applied Machine Learning (4 credits)
Offered by: Computer Science (Faculty of Science)
Overview
Computer Science (Sci) : Selected topics in machine learning and data mining, including clustering, neural networks, support vector machines, decision trees. Methods include feature selection and dimensionality reduction, error estimation and empirical validation, algorithm design and parallelization, and handling of large data sets. Emphasis on good methods and practices for deployment of real systems.
Terms: Fall 2022, Winter 2023
Instructors: Li, Yue (Fall) Rabbany, Reihaneh (Winter)
Prerequisite(s): MATH 323 or ECSE 205 or ECSE 305 or equivalent
Restriction(s): Not open to students who have taken or are taking COMP 451. Not open to students who have taken or are taking ECSE 551.
Some background in Artificial Intelligence is recommended, e.g. COMP-424 or ECSE-526, but not required.
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MATH 682 Statistical Inference (4 credits)
Offered by: Mathematics and Statistics (Faculty of Science)
Administered by: Graduate Studies
Overview
Mathematics & Statistics (Sci) : Conditional probability and Bayes’ Theorem, discrete and continuous univariate and multivariate distributions, conditional distributions, moments, independence of random variables. Modes of convergence, weak law of large numbers, central limit theorem. Point and interval estimation. Likelihood inference. Bayesian estimation and inference. Hypothesis testing.
Terms: Fall 2022
Instructors: Alam, Shomoita (Fall)
Prerequisite: MATH 141 or equivalent
Restrictions: Not open to students who have taken MATH 324, MATH 357, MATH 557. Intended for graduate students working on quantitative research questions related to life sciences who have had differential and integral calculus.
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PHYS 519 Advanced Biophysics (3 credits)
Offered by: Physics (Faculty of Science)
Overview
Physics : An advanced biophysics course, with a special emphasis on stochastic and out of equilibrium physical processes in living matter.
Terms: Winter 2023
Instructors: Bourassa, François (Winter)
Prerequisites: (PHYS 329 or PHYS 333 or PHYS 362 or MATH 437) and (PHYS 340 or PHYS 350), or permission of the instructor.
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PHYS 559 Advanced Statistical Mechanics (3 credits)
Offered by: Physics (Faculty of Science)
Overview
Physics : Scattering and structure factors. Review of thermodynamics and statistical mechanics; correlation functions (static); mean field theory; critical phenomena; broken symmetry; fluctuations, roughening.
Terms: Fall 2022
Instructors: Coish, Bill (Fall)
Fall
3 hours lectures
Restriction: U3 Honours students, graduate students, or permission of the instructor
